Ta-si prediction

Application data
Created by	Stocks MB, Mapleson D, Moxon S
Biological application domain(s)	Workflows
Principal bioinformatics method(s)	phase pattern prediction
Technology	Illumina, 454
Created at	University of East Anglia
Maintained?	Yes
Input format(s)	FASTA, FASTQ
Output format(s)	csv, Various image file formats
Programming language(s)	Java
Licence	Custom Licence
Operating system(s)	Linux 64, Windows, Mac OS X

Summary: ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets.

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Description

Part of the UEA sRNA Workbench freely available at:

http://srna-workbench.cmp.uea.ac.uk

ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets. Users are presented with the coordinates of the TAS loci and the phased sRNAs. After prediction is complete users can click on a TAS locus to have it visualised as it appears on the genome

Links

• Ta-si prediction Homepage [ edit link ]
• Ta-si prediction Manual [ edit link ]

• Add a Link

References

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