CLCbio Genomics Workbench

Application data
Created by	Thomas Knudsen and Bjarne Knudsen et al
Biological application domain(s)	Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq
Principal bioinformatics method(s)	Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation
Technology	454, Solexa, Solid, Helicos, Sanger
Created at	CLC bio
Maintained?	Yes
Input format(s)	FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more.
Output format(s)	FASTA, FASTQ, GFF, GenBank, Nexus, and more
Software features	Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface
Programming language(s)	Java, C++
Licence	Perpetual and temporal
Operating system(s)	Windows, Mac OS X, Linux

Summary: de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux.

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Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions