CLCbio Genomics Workbench

Application data
Created by	Thomas Knudsen and Bjarne Knudsen et al
Biological application domain(s)	Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq and much more...
Principal bioinformatics method(s)	Mapping, Assembly, Alignments, BLAST, wrappers, genetic variation annotation, Statistics, Visualisation
Technology	454, Illumina, ABI Solid, Helicos, Sanger
Created at	http://www.clcbio.com
Maintained?	Yes
Input format(s)	FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more.
Output format(s)	FASTA, FASTQ, GFF, GenBank, Nexus, and more
Software features	Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface
Programming language(s)	Java, C++
Licence	Perpetual, temporal, Free trial license, floating network and terminal server
Operating system(s)	Windows, Mac OS X, Linux

Summary: De novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Alignment in base- and color-space, and mixed mode. Support for paired and single reads. Includes tools for SNP and small indel detection and annotation. Runs on Windows, Mac OS X and Linux.

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Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions