MiRDeep

Application data
Created by	Developed by Marc Friedländer and Nikolaus Rajewsky Systems Biology group
Technology	Solexa/Illumina, 454, deep sequencing data
Created at	Max Delbrück Center, Berlin-Buch
Maintained?	Yes

Summary: Discovering known and novel miRNAs from deep sequencing data

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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.

The package is freely available for non-commercial purposes. For commercial purposes, please contact them.

If you use miRDeep in your scientific research, please cite: Friedländer, M.R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S., Rajewsky, N. 'Discovering microRNAs from deep sequencing data using miRDeep', Nature Biotechnology, 26, 407-415 (2008)