SOCS

Application data
Created by	Brian Ondov
Biological application domain(s)	transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery
Principal bioinformatics method(s)	Mapping, Bisulfite mapping
Technology	ABI SOLiD
Created at	Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center
Maintained?	Maybe
Input format(s)	CSFASTA/CSQUAL (ABI SOLiD)
Output format(s)	Delimited Text
Software features	coverage, colourspace, Bisulfite sequencing
Programming language(s)	C++
Licence	gnu
Operating system(s)	POSIX

Summary: SOLiD reference based, un-gapped alignment with bisulfite capability

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