SOCS
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Application data |
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| Created by | Brian Ondov |
|---|---|
| Biological application domain(s) | transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery |
| Principal bioinformatics method(s) | Mapping, Bisulfite mapping |
| Technology | ABI SOLiD |
| Created at | Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center |
| Maintained? | Maybe |
| Input format(s) | CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | Delimited Text |
| Software features | coverage, colourspace, Bisulfite sequencing |
| Programming language(s) | C++ |
| Licence | gnu |
| Operating system(s) | POSIX |
Summary: SOLiD reference based, un-gapped alignment with bisulfite capability
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