MetaSim
|
Application data |
|
| Biological application domain(s) | Metagenomics, Genomics |
|---|---|
| Principal bioinformatics method(s) | Simulation, Assembly, Mapping |
| Maintained? | Maybe |
| Programming language(s) | Java |
| Licence | Free for academic use |
Summary: Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database of given genomes, the program allows the user to design a metagenome by specifying the number of genomes present at different levels of the NCBI taxonomy, and then to collect reads from the metagenome using a simulation of a number of different sequencing technologies. A population sampler optionally produces evolved sequences based on source genomes and a given evolutionary tree. The resulting data sets can be used as standardized test scenarios for planning sequencing projects or for benchmarking assembler and metagenomic software.
"Error: no local variable "counter" was set." is not a number.
Links
References
To add a reference for MetaSim, enter the PubMed ID in the field below and click 'Add'.
Search for "MetaSim" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
