Cortex

Application data
Created by	Mario Caccamo, Zamin Iqbal
Principal bioinformatics method(s)	Assembly, Variant Calling
Created at	University of Oxford
Maintained?	Yes
Input format(s)	FASTQ, (Compressed) FASTA
Programming language(s)	C++

Summary: Cortex is an efficient and low-memory software framework for analysis of genomes using sequence data.

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Description

There are two main executables, being developed in parallel streams: cortex_con (primary contact Mario Caccamo) is for consensus genome assembly, and cortex_var (primary contact Zamin Iqbal) is for variation and population assembly.

Links

• Cortex Homepage [ edit link ]

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References

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