RobiNA
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Application data |
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| Created by | Lohse MA, Bolger T, Usadel B |
|---|---|
| Biological application domain(s) | RNA-seq |
| Principal bioinformatics method(s) | Differentially expressed gene identification |
| Technology | Illumina |
| Created at | Max Planck Institute of Molecular Plant Physiology |
| Maintained? | Yes |
| Input format(s) | Fastq |
| Software features | Trimming |
| Programming language(s) | Java, R |
| Licence | GPL |
| Operating system(s) | MAC OS, Windows, Linux |
Summary: RobiNA is a Java GUI that enables the user to graphically call differentially expressed genes. For read mapping it relies on bowtie and for the differntial expression analysis it builds on an R backbone running DESeq and edgeR.
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