DNA Baser
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Application data |
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| Created by | Heracle BioSoft SRL |
|---|---|
| Biological application domain(s) | Structural variation, SNP discovery |
| Principal bioinformatics method(s) | Assembly, Assembly editing, Sequence analysis |
| Technology | Sanger, 454 |
| Created at | Heracle BioSoft SRL |
| Maintained? | Yes |
| Input format(s) | ABI, FASTA, GenBank, SCF, SEQ, FASTA, TXT, CSV, 454 |
| Output format(s) | ABI, FASTA, GenBank, SCF, SEQ, FASTA, TXT |
| Software features | Portable. Does not require installation. Can run from USB stick. Only 3MB. |
| Programming language(s) | Compiled |
| Software libraries | N/A |
| Licence | Trial/Shareware |
| Operating system(s) | Windows |
Summary: Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection.
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Description
DNA Baser Assembler is unique bioinformatics software for manual and automatic DNA sequence assembly, DNA sequence analysis, automatic sample processing, contig editing, metadata integration, file format conversion and mutation detection.
DNA Baser concentrates on automation of sequence assembly process. With DNA Baser Sequence Assembler, you can:
- Assemble multiple DNA samples or align to a reference sequence
- Batch assemble or align in groups of sequences by name
- Automatically clip sample ends (low quality region trimming)
- Automatically detect and trim recognition (vector/primer) sequences
- Import and analyze sequences from ABI, SCF, FASTA and SEQ
- Preview chromatograms with a single click
- View and edit sequence traces
- Mark specific regions (like discrepancies, low-quality areas in chromatograms) with visible colors and quickly navigate to these regions
- Convert between different file formats (ABI, SCF, FASTA, multi-FASTA, GBK...)
Features proposed in v4
- Accurate SNP detection
- Base caller
- Blast automated searches and analysis of the results
Links
- DNA Baser Publication full text [ edit link ]
- DNA Baser Manual [ edit link ]
- DNA Baser Mailing list [ edit link ]
- DNA Baser Description [ edit link ]
- DNA Baser Binaries [ edit link ]
- DNA Baser HOWTO [ edit link ]
- DNA Baser Related [ edit link ]
References
none specified
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