23376193
This reference describes GBrowse.
| PMID | PMID 23376193 |
|---|---|
| Title | Using GBrowse 2.0 to visualize and share next-generation sequence data |
| Year | 2013 |
| Journal | Briefings in Bioinformatics |
| Author | Stein LD |
| Volume | |
| Start page |
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Full text description
GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming and limited smooth track panning. As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provides step-by-step instructions for configuring GBrowse to display NGS data.
