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Short description:
Please summarise the application in a few sentences. Avoid links here. Crossbow is a cloud-computing software tool that combines the aligner BOWTIE and the SNP caller SOAPsnp.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
SNP detection,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Read mapping,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
U Maryland
See also: [[BOWTIE]] and the SNP caller [[SOAPsnp]]. Crossbow is a scalable software pipeline for whole genome resequencing analysis. It combines [[Bowtie]], an ultrafast and memory efficient short read aligner, and [[SoapSNP]], and an accurate genotyper. These tools are combined in an automatic, parallel pipeline that runs in the cloud (Elastic MapReduce in this case) on a local Hadoop cluster, or on a single computer, exploiting multiple computers and CPUs wherever possible. The pipeline can analyze over 35x coverage of a human genome in one day on a 10-node local cluster, or in 3 hours for about $85 using a 40-node, 320-core cluster rented from Amazon Web Services.
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