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Short description:
Please summarise the application in a few sentences. Avoid links here. FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequencing quality control,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina, ABI SOLiD,
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
The Babraham Institute,
FastQC creates a comprehensive report looking at the composition and quality of a high throughput sequence library. It can operate either as an interactive stand-alone application suitable for use by end users receiving sequence data, or in a non-interactive mode which would be suitable for integrating into a sequencing pipeline.
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