FastQC
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Application data |
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| Created by | Andrews, SR |
|---|---|
| Principal bioinformatics method(s) | Sequencing quality control |
| Technology | Illumina, ABI SOLiD |
| Created at | The Babraham Institute |
| Maintained? | Yes |
| Input format(s) | FASTQ, SAM, BAM |
| Output format(s) | HTML |
| Programming language(s) | Java |
| Licence | GPLv3 |
| Operating system(s) | UNIX, Windows |
Summary: FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
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FastQC creates a comprehensive report looking at the composition and quality of a high throughput sequence library. It can operate either as an interactive stand-alone application suitable for use by end users receiving sequence data, or in a non-interactive mode which would be suitable for integrating into a sequencing pipeline.
Links
- FastQC Homepage [ edit link ]
- FastQC HOWTO [ edit link ]
- FastQC HOWTO [ edit link ]
References
none specified
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