You do not have permission to edit this page, for the following reason:
The action you have requested is limited to users in the group: Users.
Short description:
Please summarise the application in a few sentences. Avoid links here. Instead of mapping the reads to reference genomes or sequences, Geoseq maps a reference sequence against the sequencing data. It is web-based, and holds pre-computed data from public libraries.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Resequencing,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Read mapping,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Mt. Sinai School of Medicine
== Description == <!-- Describe the application in the space below --> Rapidly query a public sequencing set with a sequence of interest. - RefSeq genes and miRBase miRNAs are selectable by name/id - Custom sequences such as fusion proteins, known genomic in/dels, viral sequences can be interrogated No need to download fastq files and perform mapping/wig-ing to check coverage of a few sequences against an SRA dataset. <!-- -->
Once you save the form, you will have the chance to add links and references.
Summary of edit
This is a minor edit Watch this page
Cancel