Geoseq
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Application data |
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| Biological application domain(s) | Resequencing |
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| Principal bioinformatics method(s) | Read mapping |
| Created at | Mt. Sinai School of Medicine |
| Maintained? | Yes |
Summary: Instead of mapping the reads to reference genomes or sequences, Geoseq maps a reference sequence against the sequencing data. It is web-based, and holds pre-computed data from public libraries.
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Description
Rapidly query a public sequencing set with a sequence of interest. - RefSeq genes and miRBase miRNAs are selectable by name/id - Custom sequences such as fusion proteins, known genomic in/dels, viral sequences can be interrogated
No need to download fastq files and perform mapping/wig-ing to check coverage of a few sequences against an SRA dataset.
Links
References
To add a reference for Geoseq, enter the PubMed ID in the field below and click 'Add'.
Search for "Geoseq" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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