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Short description:
Please summarise the application in a few sentences. Avoid links here. custom nodes for the interpretation of Next Generation Sequencing data with KNIME.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Genomics, Gene regulation, Transcription factors and regulatory sites
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Data retrieval
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
[http://www.umr915.univ-nantes.fr/ UMR 915, Institut du Thorax, Université of Nantes, 44000 Nantes, France]
== Description == '''Abstract''':Analysing large amounts of data generated by next-generation sequencing (NGS) technologies is difficult for researchers or clinicians without computational skills. They are often compelled to delegate this task to computer biologists working with command line utilities. The availability of easy-to-use tools will become essential with the generalisation of NGS in research and diagnosis. It will enable investigators to handle much more of the analysis. Here, we describe [http://code.google.com/p/knime4bio/ Knime4Bio], a set of custom nodes for the [http://www.knime.org KNIME] (The Konstanz Information Miner) interactive graphical workbench, for the interpretation of large biological datasets. We demonstrate that this tool can be utilised to quickly retrieve previously published scientific findings. [[File:Notch2Knime4bio.png|center|600px]] <!-- --> [[Category:knime]] [[Category:workflow]]
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