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Short description:
Please summarise the application in a few sentences. Avoid links here. Analysis suite for short read data.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Structural variation, SNP detection,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Mapping
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina, ABI SOLiD,
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Max Planck Institute,
SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences such as those produced by a Illumina or SOLiD sequencer. It is designed for projects whose analysis strategy involves mapping of reads to a reference sequence. This reference sequence does not necessarily have to be from the same species, since weighted and gapped alignments allow for accuracy even in diverged regions.
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