Shore
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Application data |
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| Biological application domain(s) | Structural variation, SNP detection |
|---|---|
| Principal bioinformatics method(s) | Mapping |
| Technology | Illumina, ABI SOLiD |
| Created at | Max Planck Institute |
| Maintained? | Yes |
| Operating system(s) | Linux, Mac OS X, POSIX |
Summary: Analysis suite for short read data.
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SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences such as those produced by a Illumina or SOLiD sequencer. It is designed for projects whose analysis strategy involves mapping of reads to a reference sequence. This reference sequence does not necessarily have to be from the same species, since weighted and gapped alignments allow for accuracy even in diverged regions.
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