Difference between revisions of "Skewer"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. | |sw summary=Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. | ||
| − | |bio domain=Small RNA, Whole Genome Resequencing, De novo | + | |bio domain=Small RNA, RNA-Seq, Whole Genome Resequencing, De novo Sequencing, |
|bio method=Preprocessing, Adapter Removal (software), Trimming, | |bio method=Preprocessing, Adapter Removal (software), Trimming, | ||
|bio tech=Illumina, Illumina HiSeq, Illumina Solexa, | |bio tech=Illumina, Illumina HiSeq, Illumina Solexa, | ||
| Line 8: | Line 8: | ||
|maintained=Yes | |maintained=Yes | ||
|email address=hongshan.jiang@ucr.edu | |email address=hongshan.jiang@ucr.edu | ||
| − | |input format=(Compressed) FASTQ, (Compressed) FASTA, | + | |input format=(Compressed) FASTQ, (Compressed) FASTA, |
|output format=Fasta/q, Fasta.gz, fastq.gz | |output format=Fasta/q, Fasta.gz, fastq.gz | ||
| − | |sw feature=multi-threading, | + | |sw feature=multi-threading, |
| − | |language=C++, | + | |language=C++, |
| − | |os=Linux 64, | + | |os=Linux 64, |
}} | }} | ||
== Description == | == Description == | ||
Revision as of 09:46, 3 March 2014
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Application data |
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| Created by | Hongshan Jiang |
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| Biological application domain(s) | Small RNA, RNA-Seq, Whole Genome Resequencing, De novo Sequencing |
| Principal bioinformatics method(s) | Preprocessing, Adapter Removal (software), Trimming |
| Technology | Illumina, Illumina HiSeq, Illumina Solexa |
| Created at | University of California Riverside, CA 92521, USA |
| Maintained? | Yes |
| Input format(s) | (Compressed) FASTQ, (Compressed) FASTA |
| Output format(s) | Fasta/q, Fasta.gz, fastq.gz |
| Software features | multi-threading |
| Programming language(s) | C++ |
| Operating system(s) | Linux 64 |
| Contact: | hongshan.jiang@ucr.edu |
Summary: Skewer implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.
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Description
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