Adapter Removal (software)
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S |
|---|---|
| Biological application domain(s) | Workflows |
| Principal bioinformatics method(s) | Adapter removal |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | FASTA |
| Software features | Sequence trimming |
| Programming language(s) | Java |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format.
"Error: no local variable "counter" was set." is not a number.
Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format. Output comes in a "non redundant" format compressing all repeated reads into a single read with an abundance count in brackets. For example:
>
ACTG
>
ACTG
Becomes:
>ACTG(2)
ACTG
Links
References
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