Difference between revisions of "Figaro"
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. | |sw summary=Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. | ||
| − | |sw logo=FigaroLogo.png | + | |sw logo=Image:FigaroLogo.png |
|bio domain=Sequencing, | |bio domain=Sequencing, | ||
|bio method=k-mer analysis | |bio method=k-mer analysis | ||
Revision as of 20:10, 28 October 2009
|
Application data |
|
| Created by | White JR, Roberts M, Yorke JA, Pop M |
|---|---|
| Biological application domain(s) | Sequencing |
| Principal bioinformatics method(s) | k-mer analysis |
| Technology | Sanger |
| Created at | University of Maryland |
| Maintained? | Maybe |
| Input format(s) | FASTA, Trace Archive |
| Output format(s) | Clipping coordinates (CLR), AMOS Format (AFG), FASTA, QUAL (FASTA) |
| Software features | AMOS |
| Programming language(s) | C++, Perl |
| Licence | open-source |
| Operating system(s) | Unix |
Summary: Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence.
"Error: no local variable "counter" was set." is not a number.
Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. By statistically modeling short oligonucleotide frequencies within a set of reads, Figaro is able to determine which DNA words are most likely associated with vector sequence. For a description of Figaro's algorithms please see our paper. You may download Figaro individually, or as part of the AMOS package at SourceForge.
