Difference between revisions of "Ngs-pipeline"
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|sw summary=Complete solution for human re-sequencing projects | |sw summary=Complete solution for human re-sequencing projects | ||
|bio domain=Personal genomics, Epigenomics, Structural variation, | |bio domain=Personal genomics, Epigenomics, Structural variation, | ||
− | |bio method=mapping, | + | |bio method=mapping, Indel detection, SNP calling, Sequence annotation, |
|bio tech=Illumina, ABI SOLiD, | |bio tech=Illumina, ABI SOLiD, | ||
|created by=Denis Reshetov | |created by=Denis Reshetov |
Revision as of 17:17, 5 November 2015
Application data |
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Created by | Denis Reshetov |
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Biological application domain(s) | Personal genomics, Epigenomics, Structural variation |
Principal bioinformatics method(s) | mapping, Indel detection, SNP calling, Sequence annotation |
Technology | Illumina, ABI SOLiD |
Created at | VIGG RAS |
Maintained? | Yes |
Input format(s) | BAM, (Compressed) FASTQ, FASTQ, CSFASTA/CSQUAL (ABI SOLiD) |
Output format(s) | BAM, VCF |
Programming language(s) | Perl |
Licence | GPLv3 |
Operating system(s) | Linux |
Summary: Complete solution for human re-sequencing projects
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Description
Complete solution for human re-sequencing projects.
Links
References
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