SNP calling

Query returned 10 results.

	Biological domain	Bioinformatics method	Input format	Output format
Bis-SNP	DNA methylation SNP detection Sequencing Genotyping Epigenetics	Bisulfite mapping SNP calling Methylation calling	BAM	BED WIG VCF BEDGRAPH
Breakway	Whole genome resequencing Genomics Indel detection Structural variation Genetic variation	SNP calling Sequence analysis	BAM	TXT
CLCbio Genomics Workbench	Sequence assembly (de novo assembly) Whole genome resequencing Genomics Transcriptomics ChIP-seq SNP detection Indel detection RNA-Seq Regulatory RNA Mapping	Sequence assembly Sequence assembly (de-novo assembly) Read mapping Sequence alignment Ab-initio gene prediction Adapter removal Annotation Bisulfite mapping SNP calling Heat map generation Sequence assembly validation	FASTA FASTQ SAM BAM CSFASTA/CSQUAL (ABI SOLiD) ELAND GenBank Illumina Bustard	FASTA FASTQ SAM BAM GFF GenBank ACE Nexus CSV PDF XLS
Genomatix Mining Station (GMS)	ChIP-seq SNP detection RNA-Seq	Sequence assembly Read mapping SNP calling Correlation	FASTA FASTQ GenBank EMBL Solexa Solexa with Probability	FASTA SAM BAM BED GAF
GigaBayes	Genomics SNP detection	SNP calling
LSKB, Life Science Knowledge Bank	Genomics	Annotation SNP calling Sequence analysis Differential expression analysis Pathway or network analysis Classification Analysis pipeline Functional analysis
MagicViewer	Sequence assembly (de novo assembly) Exome capture Genetic variation	Visualisation SNP calling	FASTA BAM GFF
MuTect		SNP calling
QuadGT	SNPs	SNP calling Variant calling	SAM	VCF
SequenceVariantAnalyzer	Genomics Personalised medicine Sequence analysis Genetic variation	Annotation SNP calling Genome visualisation	SAMtools HMMCNV	Sva