Sequence alignment

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The bioinformatics applications assigned the Biological domain Sequence alignment ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 3 results.

	Biological domain	Bioinformatics method	Input format	Output format
BBMap	Sequence alignment Whole genome resequencing RNA-Seq alignment SNP detection Metagenomics Phylogenetics Alternative splicing Resequencing Quality control Read binning	Read mapping Sequence alignment Sequence contamination filtering Sequence trimming RNA-Seq analysis	FASTA FASTQ SAM Scarf Paired FASTA+QUAL Interleaved Gzip	FASTA FASTQ SAM FASTA+QUAL Gzip
ERNE	Sequence alignment Genomics DNA methylation Sequencing Epigenetics	Read mapping Bisulfite mapping	FASTQ (Compressed) FASTQ	SAM/BAM
GenomeBrowse	Sequence assembly (de novo assembly) Sequence alignment Whole genome resequencing Genomics Sequencing Sequence analysis Genetics Exome and whole genome variant detection Exome analysis Next Generation Sequencing	Visualisation Sequence assembly visualisation Sequence alignment visualisation	BAM