Exome analysis

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The bioinformatics applications assigned the Biological domain Exome analysis ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 7 results.

	Biological domain	Bioinformatics method	Input format	Output format
ADTEx	Copy number estimation Exome analysis Cancer biology Next Generation Sequencing	Statistical calculation	BAM BED	Tab-delimited file
BigBWA	Whole genome resequencing Genomics Exome capture Sequencing Resequencing Exome and whole genome variant detection Exome analysis Exome	Read mapping Sequence alignment Mapping	FASTA FASTQ BAM	SAM/BAM
CEQer	Copy number estimation Genetic variation analysis Exome analysis		Pileup SAM/BAM	Graphical
ERGO Genome Analysis and Discovery System	Transcriptomics Metagenomics Transcription factors and regulatory sites Phylogenetics Comparative genomics SNP Functional genomics Gene structure Exome analysis Genome Wide Association Studies Metabolic pathways	Sequence alignment SNP detection SNP annotation Gene expression analysis Pathway or network analysis Sequence annotation Sequence functional annotation Metabolic network modelling
ExomeCopy	Copy number estimation Exome and whole genome variant detection Exome analysis		BAM
GenomeBrowse	Sequence assembly (de novo assembly) Sequence alignment Whole genome resequencing Genomics Sequencing Sequence analysis Genetics Exome and whole genome variant detection Exome analysis Next Generation Sequencing	Visualisation Sequence assembly visualisation Sequence alignment visualisation	BAM
RUbioSeq	DNA methylation Sequencing Copy number estimation Epigenetics Exome analysis	Variant calling	FASTQ	VCF