RUbioSeq
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Application data |
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| Created by | Rubio-Camarillo M |
|---|---|
| Biological application domain(s) | Exome analysis, Copy number estimation, Sequencing, Epigenetics, DNA methylation |
| Principal bioinformatics method(s) | Variant calling |
| Technology | Illumina, ABI SOLiD |
| Created at | Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) |
| Maintained? | Yes |
| Input format(s) | FASTQ |
| Output format(s) | VCF |
| Programming language(s) | Perl |
| Operating system(s) | UNIX |
Summary: RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (SNVs and CNVs) and to perform Bisulfite-seq analyses automatically. RUbioSeq's variant analysis results have been already validated and published. AVAILABILITY: http://rubioseq.sourceforge.net/ 200px|right
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Links
- RUbioSeq Homepage [ edit link ]
- RUbioSeq Homepage [ edit link ]
- RUbioSeq Homepage [ edit link ]
- RUbioSeq Publication full text [ edit link ]
References
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