Sequence assembly

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The bioinformatics applications assigned the Biological domain Sequence assembly ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 12 results.

	Biological domain	Bioinformatics method	Input format	Output format
A5	Sequence assembly	De-novo assembly
ABBA	Sequence assembly	Sequence assembly Scaffolding
BioNumerics	Sequence assembly Whole genome resequencing Genotyping Sequence analysis Comparative genomics Quality control Workflows Data handling Microbial Surveillance Epidemiology	Sequence assembly Read mapping Sequence alignment Annotation Genome visualisation Variant calling Comparative genomics Workflows	FNAQual .bam (C)FAST(A/Q) Compressed fastq .ab1 And many others.
FaBox	Sequence assembly Phylogenetics
Falcon	Sequence assembly	Sequence assembly
Galaxy	Sequence assembly Whole genome resequencing Genomics Comparative genomics Functional genomics	Sequence assembly Sequence alignment Visualisation Sequencing quality control
GenoMiner	Sequence assembly Sequence assembly (de novo assembly) ChIP-seq RNA-Seq	Sequence assembly Sequence alignment Peak calling Sequence error correction Plotting and rendering Mutation detection Gene expression profiling
Kmergenie	Sequence assembly	Sequence assembly	Fasta/Fastq	HTML report
QUAST	Sequence assembly Data handling	Visualisation Sequence assembly validation	FASTA GFF Fasta.gz TXT GFF3	PDF Delimited Text HTML Plain text Graphics (png) LaTeX
ScaffViz	Sequence assembly	Sequence assembly
Skewer	Sequence assembly RNA-Seq Small RNA Sequencing	Read mapping Adapter removal Sequence trimming Read pre-processing	(Compressed) FASTQ (Compressed) FASTA	Fasta.gz Fastq.gz Fasta/q
Spiral Genetics	Sequence assembly Whole genome resequencing SNP detection Mapping Sequence analysis Statistical calculation DNA-Seq Exome and whole genome variant detection Genomic assembly Quality control	Read mapping Sequence alignment File reformatting	FASTQ Fastq.gz	VCF 4.1