Read pre-processing

Query returned 8 results.

	Biological domain	Bioinformatics method	Input format	Output format
FLASH		Sequence assembly Read pre-processing	FASTQ
Flexbar	Genomics	Adapter removal Sequence trimming DNA barcoding Quality control Read pre-processing	Fasta/q Csfasta/q	Fasta/q Csfasta/q
NGSUtils	Genomics Transcriptomics	Formatting Sequencing quality control Sequence contamination filtering Variant calling Read pre-processing	BAM BED (Compressed) FASTQ GTF
PRINSEQ	Genomics Transcriptomics Metagenomics	Sequence contamination filtering Sequence trimming Read pre-processing	FASTA FASTQ (Compressed) FASTQ QUAL (Compressed) FASTA	FASTA FASTQ QUAL
RiboPicker	Genomics Transcriptomics Metagenomics	Read pre-processing RRNA filtering	FASTA FASTQ	FASTA FASTQ
Skewer	Sequence assembly RNA-Seq Small RNA Sequencing	Read mapping Adapter removal Sequence trimming Read pre-processing	(Compressed) FASTQ (Compressed) FASTA	Fasta.gz Fastq.gz Fasta/q
Tally	Sequencing	Sequence contamination filtering Read pre-processing Sequence redundancy removal	(Compressed) FASTQ (Compressed) FASTA Table with count data Tab-delimited Customizable	Fasta.gz Custom Tab-delimited Fasta/q
ViralFusionSeq	Sequence assembly (de novo assembly) Genomics Mapping Gene structure	Sequence assembly Read mapping Sequence alignment Read pre-processing	FASTQ (Compressed) FASTQ Single-end and Paired end	FASTA Custom .fasta