FLASH
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Application data |
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| Principal bioinformatics method(s) | Sequence assembly, Read pre-processing |
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| Maintained? | Maybe |
| Input format(s) | FASTQ |
| Software features | combining forward and reverse reads |
| Programming language(s) | C |
| Licence | Open Source |
| Operating system(s) | Linux 64 |
Summary: Identifies paired-end reads which overlap in the middle, converting them to single long reads
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Description
This application combines overlapping forward and reverse reads into one long read. It takes about 2 minutes to combine 1 million 2x100 bp reads on a dual core Xeon and up. A problem might arise with perfectly repeated regions in the overlap, as this can get collapsed.
Links
References
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