Flexbar
Application data |
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Biological application domain(s) | Genomics |
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Principal bioinformatics method(s) | Read pre-processing, DNA barcoding, Adapter removal, Sequence trimming, Quality control |
Technology | Illumina, 454, ABI SOLiD |
Created at | GitHub |
Maintained? | Yes |
Input format(s) | Fasta/q, Csfasta/q |
Output format(s) | Fasta/q, Csfasta/q |
Software features | Paired read support, separate barcode reads, multi-threading |
Programming language(s) | C++ |
Software libraries | SeqAn, TBB |
Licence | GPLv3 |
Operating system(s) | Linux, Windows, Mac OS X |
Summary: Flexible barcode and adapter processing for next-generation sequencing platforms
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Description
Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. Next-generation sequencing data from Illumina, Roche 454, and the SOLiD platform is supported.
Links
- Flexbar Homepage [ edit link ]
- Flexbar Manual [ edit link ]
- Flexbar Publication full text [ edit link ]
References
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