Genotyping

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The bioinformatics applications assigned the Biological domain Genotyping ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 10 results.

	Biological domain	Bioinformatics method	Input format	Output format
BioNumerics	Sequence assembly Whole genome resequencing Genotyping Sequence analysis Comparative genomics Quality control Workflows Data handling Microbial Surveillance Epidemiology	Sequence assembly Read mapping Sequence alignment Annotation Genome visualisation Variant calling Comparative genomics Workflows	FNAQual .bam (C)FAST(A/Q) Compressed fastq .ab1 And many others.
Bis-SNP	DNA methylation SNP detection Sequencing Genotyping Epigenetics	Bisulfite mapping SNP calling Methylation calling	BAM	BED WIG VCF BEDGRAPH
CloudBurst	SNP detection Genotyping Personalised medicine	Read mapping
CNVnator	Genotyping Copy number estimation
CopySeq	Structural variation Genotyping Personalised medicine Copy number estimation		BAM	Tab-delimited file
DiscoSnp	Sequence assembly (de novo assembly) Sequencing Genotyping Comparative genomics High-throughput sequencing Population Genomics	Sequence assembly (de-novo assembly) Read depth analysis	FASTQ Fasta Compressed fasta Compressed fastq	Fasta
MARGARITA	SNP detection Genotyping
Mlgt	Exome capture Genotyping Resequencing	Sequence error correction Sequence contamination filtering Sequence analysis Read alignment DNA barcoding	FASTA	PDF Tab-delimited file RData
SESAME	Exome capture Genotyping
Tablet	Genomics Genotyping Comparative genomics	Sequence assembly visualisation	FASTA FASTQ SAM BAM MAQ SOAP ACE AFG VCF GTF GFF3	PNG