Mlgt
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Application data |
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| Created by | Dave T. Gerrard |
|---|---|
| Biological application domain(s) | Genotyping, Exome capture, Resequencing |
| Principal bioinformatics method(s) | Sequence analysis, Sequence error correction, Sequence contamination filtering, DNA barcoding, Read alignment |
| Technology | 454 |
| Created at | University of Manchester |
| Maintained? | Yes |
| Input format(s) | FASTA |
| Output format(s) | Tab-delimited file, RData, PDF |
| Software features | Sequence assignment, sequence alignment, allignment error correction, variant counting, genotype calling, allele-matching |
| Programming language(s) | R |
| Software libraries | BLAST, MUSCLE |
| Licence | GPL >=2 |
| Operating system(s) | Windows, UNIX, Mac OS X |
Summary: Processing and analysis of high throughput, long-read (e.g. Roche 454) sequences generated from multiple loci and multiple biological samples. Sequences are assigned to their locus and sample of origin, aligned and trimmed. Where possible, genotypes are called and variants mapped to known alleles.
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Description
R package on CRAN http://cran.r-project.org/web/packages/mlgt/index.html
User README guide within package and here:- http://personalpages.manchester.ac.uk/staff/David.Gerrard/mlgtREADME.pdf
Links
none specified
References
none specified
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