DNA-Seq

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The bioinformatics applications assigned the Biological domain DNA-Seq ([ ]) are tabulated below.

Definition:

Synonyms:

Query returned 3 results.

	Biological domain	Bioinformatics method	Input format	Output format
Avadis NGS	ChIP-seq RNA-Seq Sequencing DNA-Seq Small RNA-Seq RNA Methyl-Seq MeDIP-Seq Pathway or network analysis	Sequence alignment Visualisation Sequencing quality control Sequence analysis Analysis Biological interpretation	FASTA FASTQ SAM BAM ELAND BED Unaligned BAM	HTML VCF Tab-delimited Tab separated .txt TSV
Spiral Genetics	Sequence assembly Whole genome resequencing SNP detection Mapping Sequence analysis Statistical calculation DNA-Seq Exome and whole genome variant detection Genomic assembly Quality control	Read mapping Sequence alignment File reformatting	FASTQ Fastq.gz	VCF 4.1
Syapse	Genomics Transcriptomics DNA methylation ChIP-seq SNP detection Indel detection RNA-Seq Metagenomics DNA transcription Epigenomics Structural variation Population genetics Comparative genomics DNA-Seq Regulatory genomics	Visualisation Sequence analysis Differential expression analysis Ontology comparison Exome analysis Variant classification	VCF