Difference between revisions of "Readaligner"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A tool for mapping (short) DNA reads into reference sequences. | |sw summary=A tool for mapping (short) DNA reads into reference sequences. | ||
| − | |bio method= | + | |bio method=Read mapping, |
|created at=University of Helsinki, | |created at=University of Helsinki, | ||
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Latest revision as of 18:46, 5 November 2015
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Application data |
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| Principal bioinformatics method(s) | Read mapping |
|---|---|
| Created at | University of Helsinki |
| Maintained? | Maybe |
Summary: A tool for mapping (short) DNA reads into reference sequences.
"Error: no local variable "counter" was set." is not a number.
Features
- Align reads using either k-mismatches or k-errors (mismatches, insertions and deletions) model.
- Algorithms are based on Burrows-Wheeler transform and backward backtracking.
- Includes a novel data structure called the rotation index that finds alignments with higher number of mismatches in feasible time (but requires a larger index and fixed length query reads).
Links
References
none specified
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