Readaligner
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Application data |
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| Principal bioinformatics method(s) | Read mapping |
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| Created at | University of Helsinki |
| Maintained? | Maybe |
Summary: A tool for mapping (short) DNA reads into reference sequences.
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Features
- Align reads using either k-mismatches or k-errors (mismatches, insertions and deletions) model.
- Algorithms are based on Burrows-Wheeler transform and backward backtracking.
- Includes a novel data structure called the rotation index that finds alignments with higher number of mismatches in feasible time (but requires a larger index and fixed length query reads).
Links
References
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