Difference between revisions of "Rsubread"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=Rsubread is Bioconductor R package, which provides facilities to performing read alignments using the Subread aligner. It also includes other functionalities such as featureCounts read | + | |sw summary=Rsubread is Bioconductor R package, which provides facilities to performing read alignments using the Subread aligner. It also includes other functionalities such as featureCounts read summarisation function. |
| − | |bio domain= | + | |bio domain=Next Generation Sequencing, |
| − | |bio method=Read mapping, read | + | |bio method=Read mapping, read summarisation, quality assessement |
|bio tech=ABI SOLiD, Illumina HiSeq, Illumina Solexa, Ion Torrent, 454 | |bio tech=ABI SOLiD, Illumina HiSeq, Illumina Solexa, Ion Torrent, 454 | ||
|created by=Wei Shi and Yang Liao | |created by=Wei Shi and Yang Liao | ||
|created at=Australia | |created at=Australia | ||
| − | The Walter and Eliza Hall Institute, | + | The Walter and Eliza Hall Institute, |
|maintained=Yes | |maintained=Yes | ||
| − | |||
|language=R, C | |language=R, C | ||
| − | |licence= | + | |licence=GPLv3, |
| − | |os=Linux 64, Mac OS X; x86 64, Mac OS X, | + | |os=Linux 64, Mac OS X; x86 64, Mac OS X, |
}} | }} | ||
Latest revision as of 18:44, 2 December 2015
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Application data |
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| Created by | Wei Shi and Yang Liao |
|---|---|
| Biological application domain(s) | Next Generation Sequencing |
| Principal bioinformatics method(s) | Read mapping, read summarisation, quality assessement |
| Technology | ABI SOLiD, Illumina HiSeq, Illumina Solexa, Ion Torrent, 454 |
| Created at | Australia
The Walter and Eliza Hall Institute |
| Maintained? | Yes |
| Programming language(s) | R, C |
| Licence | GPLv3 |
| Operating system(s) | Linux 64, Mac OS X; x86 64, Mac OS X |
Summary: Rsubread is Bioconductor R package, which provides facilities to performing read alignments using the Subread aligner. It also includes other functionalities such as featureCounts read summarisation function.
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