Difference between revisions of "SOCS"
m (Text replace - "RNA-Seq Alignment" to "RNA-Seq alignment") |
m (Text replace - "SNP discovery" to "SNP detection") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=SOLiD reference based, un-gapped alignment with bisulfite capability | |sw summary=SOLiD reference based, un-gapped alignment with bisulfite capability | ||
| − | |bio domain=RNA-Seq alignment, DNA methylation, SNP | + | |bio domain=RNA-Seq alignment, DNA methylation, SNP detection |
|bio method=Read mapping, Bisulfite mapping | |bio method=Read mapping, Bisulfite mapping | ||
|bio tech=ABI SOLiD, | |bio tech=ABI SOLiD, | ||
Latest revision as of 15:44, 19 December 2015
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Application data |
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| Created by | Brian Ondov |
|---|---|
| Biological application domain(s) | RNA-Seq alignment, DNA methylation, SNP detection |
| Principal bioinformatics method(s) | Read mapping, Bisulfite mapping |
| Technology | ABI SOLiD |
| Created at | Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center |
| Maintained? | Maybe |
| Input format(s) | CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | Delimited Text |
| Software features | coverage, colourspace, Bisulfite sequencing |
| Programming language(s) | C++ |
| Licence | GPLv3 |
| Operating system(s) | POSIX |
Summary: SOLiD reference based, un-gapped alignment with bisulfite capability
"Error: no local variable "counter" was set." is not a number.
Links
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