Difference between revisions of "FusionAnalyser"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. | |sw summary=FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. | ||
| − | |bio domain=High-throughput sequencing | + | Tested on Illumina. Requires short, paired-end sequences. |
| − | + | |bio domain=High-throughput sequencing, Gene structure, | |
| − | |bio tech= | + | |bio tech=Illumina, |
|created by=Piazza R | |created by=Piazza R | ||
|created at=University of Milano-Bicocca, Milan, Italy | |created at=University of Milano-Bicocca, Milan, Italy | ||
| Line 22: | Line 22: | ||
FusionAnalyser has been published in: Nucleic Acids Res. 2012 May 8. | FusionAnalyser has been published in: Nucleic Acids Res. 2012 May 8. | ||
| − | It can be downloaded from: http://www. | + | It can be downloaded from: http://www.ngsbicocca.org/html/fusionanalyser.html |
Latest revision as of 19:27, 19 December 2015
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Application data |
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| Created by | Piazza R |
|---|---|
| Biological application domain(s) | High-throughput sequencing, Gene structure |
| Technology | Illumina |
| Created at | University of Milano-Bicocca, Milan, Italy |
| Maintained? | Yes |
| Input format(s) | SAM/BAM |
| Output format(s) | Graphical |
| Software features | Advanced and user-friendly analysis of RNA-seq data for fusion discovery |
| Programming language(s) | C# |
| Software libraries | NET framework 4 (Windows) or Mono (Linux) |
| Licence | GPLv3 |
| Operating system(s) | Windows, Linux |
Summary: FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. Tested on Illumina. Requires short, paired-end sequences.
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Description
FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. A fully event-driven graphical interface and a flexible filtering system allow complex analyses to be run in the absence of any a priori programming or scripting knowledge. Therefore, we propose FusionAnalyser as an efficient and robust graphical tool for the identification of functional rearrangements in the context of high-throughput transcriptome sequencing data.
FusionAnalyser has been published in: Nucleic Acids Res. 2012 May 8.
It can be downloaded from: http://www.ngsbicocca.org/html/fusionanalyser.html
Links
References
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