Difference between revisions of "NextGENe"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | |sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | ||
| − | |bio domain=Sequence assembly (de novo assembly), Metagenomics, SNP detection, | + | |bio domain=Sequence assembly (de novo assembly), Metagenomics, SNP detection, Indel detection, Targeted resequencing, |
|bio tech=Illumina, 454, ABI SOLiD | |bio tech=Illumina, 454, ABI SOLiD | ||
|created at=SoftGenetics LLC | |created at=SoftGenetics LLC | ||
Revision as of 19:56, 19 December 2015
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Application data |
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| Biological application domain(s) | Sequence assembly (de novo assembly), Metagenomics, SNP detection, Indel detection, Targeted resequencing |
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| Technology | Illumina, 454, ABI SOLiD |
| Created at | SoftGenetics LLC |
| Maintained? | Yes |
| Input format(s) | FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD) |
| Software features | Unique condensation tool, Data Visualisation, very flexible |
| Programming language(s) | C++ |
| Licence | Commercial |
| Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
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Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
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References
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