NextGENe
Application data |
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Biological application domain(s) | Sequence assembly (de novo assembly), Metagenomics, SNP detection, Indel detection, Exome capture |
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Technology | Illumina, 454, ABI SOLiD |
Created at | SoftGenetics LLC |
Maintained? | Yes |
Input format(s) | FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD) |
Software features | Unique condensation tool, Data Visualisation, very flexible |
Programming language(s) | C++ |
Licence | Commercial |
Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
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Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
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References
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