Difference between revisions of "MrCaNaVaR"
m (Text replace - "Personal genomics" to "Personalised medicine") |
|||
(2 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | |sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | ||
− | |bio domain=Genomics, | + | |bio domain=Genomics, Personalised medicine, Copy number estimation, |
|bio method=Read depth analysis | |bio method=Read depth analysis | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
Line 10: | Line 10: | ||
|output format=BED (copy numbers) | |output format=BED (copy numbers) | ||
|language=C | |language=C | ||
− | |licence= | + | |licence=Commercial, Freeware, |
− | |os=POSIX, | + | |os=POSIX, |
}} | }} | ||
Latest revision as of 20:04, 19 December 2015
Application data |
|
Created by | Can Alkan |
---|---|
Biological application domain(s) | Genomics, Personalised medicine, Copy number estimation |
Principal bioinformatics method(s) | Read depth analysis |
Technology | Illumina |
Created at | University of Washington |
Maintained? | Yes |
Input format(s) | SAM |
Output format(s) | BED (copy numbers) |
Programming language(s) | C |
Licence | Commercial, Freeware |
Operating system(s) | POSIX |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
"Error: no local variable "counter" was set." is not a number.
Links
References
none specified
To add a reference for MrCaNaVaR, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "MrCaNaVaR" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|