Difference between revisions of "MiRDeep"
m (Text replace - "([= ])miRNA," to "$1Regulatory RNA,") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
| − | |bio domain= | + | |bio domain=Regulatory RNA, |
|bio tech=Illumina, 454 | |bio tech=Illumina, 454 | ||
|created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | |created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | ||
Latest revision as of 20:53, 19 December 2015
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Application data |
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| Created by | Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
|---|---|
| Biological application domain(s) | Regulatory RNA |
| Technology | Illumina, 454 |
| Created at | Max Delbrück Center, Berlin-Buch |
| Maintained? | Yes |
| Programming language(s) | Perl |
Summary: Discovering known and novel miRNAs from deep sequencing data
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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
Links
References
To add a reference for MiRDeep, enter the PubMed ID in the field below and click 'Add'.
Search for "MiRDeep" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
