Changes

|sw summary=de De novo and reference assembly of Sanger, 454, Solexa, Helicos, SNP and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP small indel detection, browser and other features. Runs on Windows, Mac OS X and Linuxannotation.|bio domain=Genomics, Whole Genome Resequencinggenome resequencing, De-Sequence assembly (de novo assembly), SNP discoverydetection, InDel discoveryIndel detection, ChIP-Seq, InDel discoveryseq, RNA-Seq,Regulatory RNA, Transcriptomics, Mapping|bio method=MappingRead mapping, Sequence assembly, Sequence alignment, Ab-initio gene prediction, AssemblyAdapter removal, AlignmentsAnnotation, command line tool wrappers Bisulfite mapping, genetic variation annotationSNP calling, Statistics Sequence assembly (de-novo assembly), VisualisationHeat map generation,Sequence assembly validation|bio tech=454, Illumina, ABI SolidSOLiD, Helicos, Sanger, Ion Torrent,|created by=Thomas Knudsen and Bjarne T, Knudsen et alB|created at=CLC biohttp://www.clcbio.com

|input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more.|output format=FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus, and moreCSV, PDF, XLS,|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic , and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution,

|library=OPEN CLC API for plug in development|licence=PerpetualCommercial, temporal, Free trial license|os=Windows, Mac OS X, Linux,

Link: http:Server//wwwenterprise options for scalability of computation and storage.clcbio Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.com/index.php?id=1240 Category: Integrated solutions{{Links}}{{References}}{{Link box}}