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|sw summary=De novo and reference assembly SNP and small indel detection and annotation.
|bio domain=Genomics, Whole genome resequencing, Sequence assembly (de novo assembly), SNP detection, Indel detection, ChIP-Seq, RNA-Seq, Regulatory RNA, Transcriptomics, Mapping
|bio method=Read mapping, Sequence assembly, Sequence alignment, Ab-initio gene prediction, Adapter removal, Annotation, Bisulfite mapping, SNP calling, Sequence assembly (de-novo assembly), Heat map generation, Sequence assembly validation
|bio tech=454, Illumina, ABI SOLiD, Helicos, Sanger, Ion Torrent,
|created by=Knudsen T, Knudsen B
