Changes

|sw summary=De novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Support for paired and single reads. Alignment in base- and color-space, and mixed mode of any of the above including both short and long reads. Includes tools for SNP and small indel detection and annotation. Runs equally well on Windows, Mac OS X and Linux platforms, plus server/enterprise options for scalability of computation and storage.|bio domain=Genomics, Whole Genome Resequencinggenome resequencing, De-Sequence assembly (de novo assembly), SNP discoverydetection, InDel discoveryIndel detection, ChIP-Seqseq, RNA-Seq and much more..., Regulatory RNA, Transcriptomics, Mapping|bio method=MappingRead mapping, Sequence assembly, Sequence alignment, Ab-initio gene prediction, Adapter removal, Annotation, Bisulfite mapping, AssemblySNP calling, and Alignments accelerated with SIMD implementation and multiSequence assembly (de-threading.Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.novo assembly), Heat map generation, Sequence assembly validation|bio tech=454, Illumina, ABI SolidSOLiD, Helicos, Sanger, Ion Torrent,|created by=Thomas Knudsen and Bjarne T, Knudsen et alB

|input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more.|output format=FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus, and moreCSV, PDF, XLS,|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic , and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution,

|library=OPEN CLC API for plug in development|licence=Perpetual, temporalCommercial, Free trial license, floating network and terminal server|os=Windows, Mac OS X, Linux,

Link: http:Server//wwwenterprise options for scalability of computation and storage.clcbio Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.com/index.php?id=1240 Category: Integrated solutions{{Links}}{{References}}{{Link box}}