1,009
edits
Changes
m
Link: http://www.clcbio.com/index.php?id=1240
Text replace - "ChIP-Seq" to "ChIP-seq"
{{Bioinformatics application
|sw summary=De novo and reference assembly SNP and small indel detection and annotation.
|bio domain=Genomics, Whole Genome Resequencinggenome resequencing, De-Sequence assembly (de novo assembly), SNP discoverydetection, InDel discoveryIndel detection, ChIP-Seqseq, RNA-Seq, Regulatory RNA, Transcriptomics, Mapping|bio method=MappingRead mapping, Sequence assembly, Sequence alignment, Ab-initio gene prediction, AssemblyAdapter removal, AlignmentsAnnotation, Paired end Bisulfite mapping, ColorspaceSNP calling, Sequence assembly (de-novo assembly), Heat map generation, Sequence assembly validation|bio tech=454, Illumina, ABI SolidSOLiD, Helicos, Sanger, Ion Torrent,
|created by=Knudsen T, Knudsen B
|created at=http://www.clcbio.com
|maintained=Yes
|input format=FASTA, FASTQ, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD)|output format=FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus, CSV, PDF, XLS,|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic, and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution,
|language=Java, C++
|library=OPEN CLC API for plug in development|licence=Perpetual, temporal, floating network and terminal server licenses available. FreeCommercial, limited time trial and evaluation licenses.
|os=Windows, Mac OS X, Linux
}}
Server/enterprise options for scalability of computation and storage.
Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.
{{Links}}
{{References}}
{{Link box}}
