Difference between revisions of "PeakAnalyzer"
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{{Bioinformatics application | {{Bioinformatics application | ||
| + | |sw summary=PeakAnalyzer is a set of applications for processing ChIP signal peaks. | ||
| + | |bio domain=Functional genomics, ChIP-seq | ||
|created by=Zoolium | |created by=Zoolium | ||
| − | |created at=EMBL-EBI, | + | |created at=EMBL-EBI, |
| − | |language=Java | + | |maintained=Yes |
| + | |output format=BED, GTF | ||
| + | |language=Java, C++, R, | ||
}} | }} | ||
== Description == | == Description == | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | PeakAnalyzer is a set of standalone programs for the automated processing of any genomic loci, with an emphasis on datasets consisting of ChIP-derived signal peaks. The software is able to identify individual binding/modification sites from enrichment loci, retrieve peak region sequences for motif discovery, and integrate experimental data with different classes of annotated elements throughout the genome. | |
Latest revision as of 10:28, 11 January 2016
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Application data |
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| Created by | Zoolium |
|---|---|
| Biological application domain(s) | Functional genomics, ChIP-seq |
| Created at | EMBL-EBI |
| Maintained? | Yes |
| Output format(s) | BED, GTF |
| Programming language(s) | Java, C++, R |
Summary: PeakAnalyzer is a set of applications for processing ChIP signal peaks.
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Description
PeakAnalyzer is a set of standalone programs for the automated processing of any genomic loci, with an emphasis on datasets consisting of ChIP-derived signal peaks. The software is able to identify individual binding/modification sites from enrichment loci, retrieve peak region sequences for motif discovery, and integrate experimental data with different classes of annotated elements throughout the genome.
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