Difference between revisions of "CNAseg"
(Created page with '{{Bioinformatics application |sw summary=We present a novel approach, called CNAseg, to identify CNAs from second-generation sequencing data. It uses depth of coverage to estimat…') |
Janazuczkova (talk | contribs) |
||
| (3 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=We present a novel approach, called CNAseg, to identify CNAs from second-generation sequencing data. It uses depth of coverage to estimate copy number states and flowcell-to-flowcell variability in cancer and normal samples to control the false positive rate. | |sw summary=We present a novel approach, called CNAseg, to identify CNAs from second-generation sequencing data. It uses depth of coverage to estimate copy number states and flowcell-to-flowcell variability in cancer and normal samples to control the false positive rate. | ||
| − | |bio domain=Structural | + | |bio domain=Structural variation |
| + | |interface=Command line, | ||
| + | |resource type=Command-line tool, | ||
| + | |created at=Cancer Research UK Cambridge Research Institute | ||
| + | |language=R, | ||
}} | }} | ||
== Description == | == Description == | ||
Latest revision as of 16:32, 4 November 2016
|
Application data |
|
| Biological application domain(s) | Structural variation |
|---|---|
| Created at | Cancer Research UK Cambridge Research Institute |
| Maintained? | Maybe |
| Programming language(s) | R |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
Summary: We present a novel approach, called CNAseg, to identify CNAs from second-generation sequencing data. It uses depth of coverage to estimate copy number states and flowcell-to-flowcell variability in cancer and normal samples to control the false positive rate.
"Error: no local variable "counter" was set." is not a number.
Description
Links
References
To add a reference for CNAseg, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "CNAseg" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
