Difference between revisions of "PASS"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=PASS performs fast gapped and ungapped alignments of short DNA sequences onto a reference DNA, typically a genomic sequence. It is designed to handle a huge amount of reads such as those generated by Solexa, SOLiD or 454 technologies. The algorithm is based on a data structure that holds in RAM the index of the genomic positions of seed" words (typically 11-12 bases) as well as an index of the precomputed scores of short words (typically 7-8 bases) aligned against each other. | |sw summary=PASS performs fast gapped and ungapped alignments of short DNA sequences onto a reference DNA, typically a genomic sequence. It is designed to handle a huge amount of reads such as those generated by Solexa, SOLiD or 454 technologies. The algorithm is based on a data structure that holds in RAM the index of the genomic positions of seed" words (typically 11-12 bases) as well as an index of the precomputed scores of short words (typically 7-8 bases) aligned against each other. | ||
| − | |bio method= | + | |bio method=Alignments |
| − | |||
|language=C++ | |language=C++ | ||
| − | |os=Linux, Windows, | + | |os=Linux, Windows, |
}} | }} | ||
Link: http://pass.cribi.unipd.it Category: Alignment | Link: http://pass.cribi.unipd.it Category: Alignment | ||
Revision as of 20:44, 13 January 2010
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Application data |
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| Principal bioinformatics method(s) | Alignments |
|---|---|
| Maintained? | Maybe |
| Programming language(s) | C++ |
| Operating system(s) | Linux, Windows |
Summary: PASS performs fast gapped and ungapped alignments of short DNA sequences onto a reference DNA, typically a genomic sequence. It is designed to handle a huge amount of reads such as those generated by Solexa, SOLiD or 454 technologies. The algorithm is based on a data structure that holds in RAM the index of the genomic positions of seed" words (typically 11-12 bases) as well as an index of the precomputed scores of short words (typically 7-8 bases) aligned against each other.
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Link: http://pass.cribi.unipd.it Category: Alignment
